FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10951586
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1077708098.406568692425No Hit
GATTAG280170.2558259598198836No Hit
GATCCG210850.19252919166228527No Hit
GATCAA161730.14767724053849368No Hit
GCTCAG149850.13682949665920535No Hit
GAACAG115580.1055372253845242No Hit
GATCAT115500.10546417660419231No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)