FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10872645
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1070256298.43567963453235No Hit
CGTCCG381640.3510093450121842No Hit
CGTGCG170220.15655804084470706No Hit
CGTTCG150010.13797010754972688No Hit
CTTACG145930.13421757079349136No Hit
CGTACT125920.11581358537871879No Hit
TGTACG117290.1078762343477599No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)