EGAF00004829095 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004829095
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13624537
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	38963	0.2859766904372604	No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG	36320	0.26657786609555983	No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT	33752	0.2477295191755874	No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC	16923	0.12420972543874335	No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG	16717	0.12269774745372998	No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG	16233	0.11914533315884424	No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG	14710	0.10796697164828428	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACCGT	2125	54.169544	1
GACCGTT	2705	42.03263	2
ACCGTTG	2675	41.976803	3
CGCGGGT	8975	40.20451	1
TCGTAAG	1630	37.75776	6
TAACCCC	9395	37.75526	9
CGACCTA	2225	35.89601	4
GCGGGTC	10185	35.842514	2
GTCGTAA	1740	35.10116	5
CCGTTGA	3295	34.790585	4
CTTAGCG	1645	33.986526	8
CGCAAAA	10780	33.60343	1
TTAACCC	10950	32.007404	8
CGGGTCT	11490	31.648726	3
ATCACAT	6370	28.839342	1
TGCAACC	11865	28.800793	94
AAATTAA	12455	28.630264	5
CGTAAGG	2315	27.803232	7
TGACGAC	2895	27.427496	1
CACATGC	14390	27.067102	1