FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12980402
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC1274720498.20346087894659No Hit
GTCTGC278110.21425376502206941No Hit
GTCCGT196940.15172103298495687No Hit
GTTCGC165950.12784657979005581No Hit
GTCCCC163140.1256817778062652No Hit
GTCCGA156210.12034296010246831No Hit
GCCCGC152720.11765429144644365No Hit
GGCCGC147400.11355580512837737No Hit
GACCGC146360.11275459727672532No Hit
GTCCAC145560.1121382835446853No Hit
GTCCTC141390.10892574821642657No Hit
GTCAGC137740.10611381681399389No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)