FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14790942
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC332010.2244684618464463No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG295900.20005487142063025No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT280150.18940646241463188No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG248620.1680893617188141No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT203440.1375436398844644No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC157130.10623393695952564No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC152670.10321857796481117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)