FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14722897
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC333130.22626661043679105No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG293790.19954632569935113No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT282610.19195271148062776No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG248780.1689748967203941No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT204920.13918456401617155No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC156700.10643285760947727No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC152870.10383146740753535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)