FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004829114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15962070
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGA1572112198.49049026849275No Hit
ACTTGC541990.33954869261944093No Hit
CCTTGA204560.12815380461306083No Hit
ATTTGA197910.12398767828984587No Hit
ACTTCA185770.11638214843062336No Hit
ACTTTA173050.10841325717779711No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)