FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14099136
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1383773298.14595731256156No Hit
TAGCTC334960.23757484146546284No Hit
TAGCTA299100.2121406588318603No Hit
TAGTTT281090.19936682644950726No Hit
TAGCCT261200.18525957902668647No Hit
TATCTT195320.13853331154476414No Hit
TCGCTT170410.12086556225856676No Hit
TAACTT153130.10860949209937404No Hit
TAGATT141870.10062318712295562No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)