FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14058648
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1380223698.17612618226163No Hit
TAGCTC327470.2329313601137179No Hit
TAGCTA293420.20871139244684125No Hit
TAGTTT285920.20337659780656006No Hit
TAGCCT253620.18040141555574904No Hit
TATCTT201250.1431503228475455No Hit
TCGCTT171010.12164043085793172No Hit
TAACTT148760.10581387342509749No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)