FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14202653
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCTT1392446598.04129552415313No Hit
TAGTTT336520.23694164745135995No Hit
TAGCTC327800.2308019494667651No Hit
TAGCTA294900.20763726326341989No Hit
TAGATT261440.18407828452895383No Hit
TAGCCT259500.1827123425461426No Hit
TATCTT192600.13560846695332204No Hit
TCGCTT166310.11709784080481303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)