FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13960144
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1373425498.38189348190105No Hit
GGCTCC383770.27490404110444705No Hit
GTCTAC208790.14956149449461267No Hit
AGCTAC196750.1409369416246709No Hit
GGCTAA196200.14054296288061213No Hit
GGCTAT179250.12840125431370908No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)