FastQCFastQC Report
Wed 8 May 2024
EGAF00004829135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13918532
Total Bases83.5 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1369906698.42321014888638No Hit
GGCTCC369720.2656314617087492No Hit
GTCTAC211650.1520634503696223No Hit
GGCTAA194530.13976330262415604No Hit
AGCTAC190380.13678166634239877No Hit
GGCTAT176680.12693867427973007No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)