FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14059820
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC1381981898.29299379366165No Hit
GGCTCC371150.26397919745771997No Hit
GTCTAC208560.14833760318410905No Hit
GGCTAA185840.13217807909347346No Hit
GGCAAC185480.13192203029626268No Hit
AGCTAC179850.12791771160654974No Hit
GGCCAC179240.12748385114460925No Hit
GGCTAT172060.12237710013357213No Hit
GGCGAC146470.10417629813183954No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)