EGAF00004829140 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004829140
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14059820
Sequences flagged as poor quality	0
Sequence length	100
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	44024	0.3131192291224212	No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC	24762	0.17611889768147812	No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG	24646	0.1752938515571323	No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	23605	0.1678897738377874	No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC	18414	0.13096895977331147	No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC	17589	0.1251011748372312	No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA	16480	0.11721344938982149	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	15265	0.10857180248395784	No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGA	14888	0.10589040257983388	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAG	14725	0.10473107052579621	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	14534	0.10337258940726127	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCAGTAG	9965	42.952507	5
TAGCATA	10240	42.945602	9
GTAGCAT	10670	40.686504	8
CAGTAGC	11405	37.734882	6
GCCAGTA	12165	35.725395	4
GTCTAAC	4270	34.220722	1
AGTAGCA	12930	33.611355	7
TGCCAGT	13995	31.053905	3
TCACCCG	7770	30.959675	3
CACCCGG	8295	29.170124	4
CAGTTAT	14645	28.2122	94
TCAGACG	8680	26.847935	2
GTTAGTT	6015	25.54282	1
GCATATG	10565	25.304329	10-11
ACCCGGC	9895	24.690788	5
TAACACG	5905	24.347197	4
AACACGT	6065	23.937296	5
CATATGC	10955	23.88989	12-13
ACCGTTG	3100	23.794981	3
GCGATTT	9430	23.576908	94