FastQCFastQC Report
Wed 8 May 2024
EGAF00004829141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12460883
Total Bases74.7 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1222227698.08515175048188No Hit
GTGGCT469500.37677907737356975No Hit
GTGTCC206430.1656624173423344No Hit
GTTGCC197860.15878489509932806No Hit
GTGGTC185310.1487133776956256No Hit
GTGGAC151100.12125946451788368No Hit
ATGGCC137360.11023295861136005No Hit
TTGGCC135570.1087964633003937No Hit
GTGGCA130980.10511293621808342No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)