FastQCFastQC Report
Wed 8 May 2024
EGAF00004829144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12418539
Total Bases74.5 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1218135998.09011349885844No Hit
GTGGCT465250.37464149365718463No Hit
GTGTCC207300.1669278487590207No Hit
GTTGCC203500.16386790748895663No Hit
GTGGTC184250.14836688921297425No Hit
GTGGAC145330.11702664862589714No Hit
ATGGCC133020.10711404940629489No Hit
TTGGCC131390.10580149565097795No Hit
GTGGCA129400.10419905272270756No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)