FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004829147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12526522
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC1226938997.9472913550944No Hit
GTGGCT469970.3751799581719491No Hit
GTGTCC255280.20379160312814681No Hit
GTGACC227350.18149491135687942No Hit
GTTGCC202920.16199229123614678No Hit
GTGGTC179850.1435753675281934No Hit
GTGCCC162180.12946929722392217No Hit
GTGGAC142250.11355905493959137No Hit
TTGGCC133140.10628648558634232No Hit
ATGGCC130900.10449827973000009No Hit
GTGGCA126440.10093783414103293No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)