FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13703826
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1324188396.62909467764695No Hit
GTTTTG1795471.3101961452225095No Hit
GTTTCC316940.23127847653640668No Hit
GGTTCG253480.18497024115746946No Hit
GCTTCG226510.16528960598302986No Hit
GTTTAG225570.16460366615863337No Hit
GTTTCT219800.16039316319398686No Hit
GATTCG210430.15355565664654527No Hit
GTTTCA207760.15160729565597228No Hit
GTTCCG204260.14905326439492153No Hit
ATTTCG148630.10845876180856354No Hit
TTTTCG144510.10545230215269809No Hit
GTTTGG144280.10528446581268619No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)