FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13935533
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCG1342604396.34395038926749No Hit
GTTTTG1853871.3303186896403605No Hit
GTTTCC339060.24330608667784717No Hit
GTTCCG282170.20248238800769225No Hit
GGTTCG280460.20125530900038055No Hit
GTTACG251220.18027297556541252No Hit
GCTTCG241070.1729894364284452No Hit
GTTTAG236960.17004014127052047No Hit
GTTTCT228080.1636679415132525No Hit
GTTTCA222740.15983601057813862No Hit
GATTCG219970.15784828610430618No Hit
GTTGCG170360.12224864309101058No Hit
GTTTGG155740.11175747637352659No Hit
ATTTCG142950.10257949947088496No Hit
TTTTCG141900.10182602990499179No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)