EGAF00004829161 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004829161
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14770494
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG	48938	0.3313227032217067	No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT	31888	0.2158898680030607	No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC	28615	0.19373082579363965	No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG	27454	0.1858705605919477	No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC	26365	0.17849775369733742	No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT	21414	0.1449782248312074	No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC	21057	0.1425612440585941	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	20777	0.1406655728643876	No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC	20598	0.13945369735094845	No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA	19380	0.13120752765615015	No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG	18651	0.12627201229694823	No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA	18544	0.12554759509059074	No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA	18284	0.1237873289816847	No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT	17505	0.1185133009092316	No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA	17164	0.11620464420485868	No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT	15034	0.10178400262035922	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACCGT	2430	54.122177	1
ACCGTTG	2755	47.908024	3
CCAGTAG	10680	46.22282	5
GACCGTT	2850	45.981472	2
TCACCCG	7715	43.34785	3
CACCCGG	7595	43.105087	4
CAGTAGC	11645	42.5941	6
TAGCATA	11650	42.45558	9
GTAGCAT	11760	42.057896	8
GCCAGTA	12670	39.22226	4
ACCCGGC	8650	38.065098	5
CGCAAAA	6205	38.00016	1
TGCCAGT	14740	33.745975	3
AGTAGCA	14880	33.6181	7
GTCTAAC	4475	33.27283	1
GCGATTT	8965	33.194317	94
GTAGGTC	6245	28.731243	2
TAACCCC	8410	28.596067	9
ACGTGCG	5240	28.05689	8
CAGTTAT	17190	27.512653	94