FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14716111
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGC1450655098.57597567726962No Hit
TTATGC211370.14363169726023403No Hit
TTAGGA207380.14092038310936905No Hit
TTAGCC192680.13093133097460327No Hit
TTAGTC188760.12826758373866576No Hit
TTCGGC154020.1046608033875254No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)