FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14835987
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGC1460803098.46348611656238No Hit
TTATGC270460.1822999710096807No Hit
TTAAGC224160.15109207092187396No Hit
TTAGGA196790.13264368592396314No Hit
TTAGCC188950.12735923804732371No Hit
TTACGC181420.12228374155356161No Hit
TTAGTC180890.1219265020925133No Hit
TTCGGC149810.10097744086726416No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)