FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14612077
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1432219398.01613418817873No Hit
GATCCG468060.32032407165661664No Hit
GATTAG391740.2680933039156582No Hit
GCTCAG244260.16716309392566164No Hit
GATCAA231530.15845112231478112No Hit
GATCAT184690.12639544672533548No Hit
GAACAG163760.11207167879008575No Hit
GACCAG156310.10697315651977471No Hit
GATAAG149890.10257953061703685No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)