FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14755150
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG1445696597.97911237771218No Hit
GATCCG461590.3128331463929543No Hit
GATTAG443960.30088477582403433No Hit
GATAAG251390.17037441164610323No Hit
GCTCAG236810.16049311596290108No Hit
GATCAA218020.14775857920793756No Hit
GATCAT163370.11072066363269774No Hit
GAACAG150180.10178141191380637No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)