FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14863852
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1465299798.58142424991853No Hit
CGTCCG364340.24511815645096574No Hit
CTTACG235040.15812859277662344No Hit
CGTACT199570.13426533041367741No Hit
TGTACG164380.11059044452272533No Hit
AGTACG157700.10609632011944145No Hit
CGTAAG149540.10060649150704676No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)