FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004829180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14782710
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1457880798.6206656289679No Hit
CGTCCG355060.24018600107828672No Hit
CTTACG238370.1612491890864395No Hit
CGTACT196730.13308114682625852No Hit
TGTACG159610.10797073067116923No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)