FastQCFastQC Report
Tue 10 May 2022
EGAF00004829183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14918602
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACG1469644398.5108591274169No Hit
CGTCCG426240.28571041710208506No Hit
CTTACG235960.1581649540620495No Hit
CGTACT191250.12819565801138738No Hit
TGTACG163190.10938692512877546No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)