FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12469306
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCT1226793098.3850264000258No Hit
CTTCCT314410.2521471523756013No Hit
ATTCTT232730.1866423039100973No Hit
ATTCCC185180.1485086659995352No Hit
ATTTCT183960.1475302635126606No Hit
GTTCCT129390.10376680145631201No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)