FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12412890
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC312320.251609415696103No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC289360.2331125144909848No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG245660.1979071755247972No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA192940.15543519679945605No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA170570.13741360795108953No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT168360.13563320064868054No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT151360.12193775986091876No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC139810.11263291626688063No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC138170.11131170903794362No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT134500.10835510505611506No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA133230.10733197506785286No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC132270.1065585854704263No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA130520.10514876068345083No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA129660.1044559325024229No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG126090.1015798899369929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)