FastQCFastQC Report
Wed 8 May 2024
EGAF00004829240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12446605
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC312190.25082341730937874No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC291450.23416023887638435No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG246180.19778887495827177No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA189380.1521539407734077No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA172810.1388410735296894No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT168510.13538631618822966No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT148770.11952656969510962No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC139890.11239209406902526No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC138240.11106643136823255No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA135530.10888913081117302No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC135200.10862399827101447No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT133920.10759560538797527No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA132440.1064065261169612No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG129800.1042854657956929No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA129650.10416495100471174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)