FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12331168
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA181770.14740696096265982No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA151270.12267288873203251No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG142840.1158365533581247No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT139820.11338747473069867No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT135860.11017610010665656No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG131300.10647815356988082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)