FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10773072
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA223230.2072110907640829No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT142670.1324320490942602No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG142050.13185654008438819No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA132820.1232888817600031No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA126620.11753379166128286No Hit
CTTATCGTCAGCCTTGCAGCACTTCTCTACAAAAGCTGCGAAATCATCCA119960.11135171100685116No Hit
CTCATGGTAGGCTGAAATGCTTTTAAATGTGATGTTATAAGCCTAAGGCA114620.10639490759924373No Hit
CCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACA109440.10158662264579685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)