FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10833850
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA219400.20251341859080568No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT141120.1302584030607771No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG136590.12607706401694688No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA128410.1185266548826133No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA124770.11516681512112499No Hit
CTTATCGTCAGCCTTGCAGCACTTCTCTACAAAAGCTGCGAAATCATCCA120540.11126238594774711No Hit
CTCATGGTAGGCTGAAATGCTTTTAAATGTGATGTTATAAGCCTAAGGCA117540.10849328724322378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)