FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11585929
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG398100.34360645572746046No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT373480.322356541283828No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC306480.26452777330156263No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT282510.24383888421895214No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC277790.23976497698199256No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC276110.23831494220273577No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG266520.2300376603378115No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC258260.22290832267313224No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA204250.17629143075190604No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC203160.1753506343772692No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT194660.1680141488869818No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT169160.1460046924161196No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG155840.13450798809486922No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA155000.1337829707052408No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC149170.1287510047748437No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA144700.12489287652289256No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC138700.11971418088268969No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA128390.11081545554094108No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC126580.10925321568947988No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT126460.10914964177667583No Hit
CAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCCAAGGCAA125630.10843325554644777No Hit
TCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA118570.10233965700980904No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT118270.1020807222277989No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT116040.10015597368152351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)