FastQCFastQC Report
Wed 8 May 2024
EGAF00004829266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11547355
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG394630.34174925773044995No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT371350.32158879674176466No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC306860.26574050940669963No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT289940.25108780322420154No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC279730.24224595156206769No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC273500.23685077664971763No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG263600.22827738473442621No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC257320.222838909862908No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA208870.1808812494289818No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC199050.1723771374483594No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT191580.16590812354863949No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT167690.1452194030581029No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA154340.13365831396020994No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG154170.13351109409903827No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC150570.1303934970389323No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA141590.1226168243723346No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC138860.12025264660175425No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA129110.11180915456396724No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC128170.11099511533160623No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT124980.10823257793667901No Hit
CAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCCAAGGCAA123980.10736657875331623No Hit
TCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA118610.10271616313865817No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT118180.10234378348981217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)