FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10417500
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG350880.33681785457163427No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC314350.3017518598512119No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT297340.2854235661147108No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG288960.27737940964722824No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC280200.2689704823614111No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC271990.26108951283897286No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC265660.2550131989440845No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT226160.2170962323014159No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA201490.19341492680585554No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC181000.17374610031197504No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT167020.1603263738900888No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT164020.15744660427165827No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA157720.15139908807295416No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT154780.14857691384689226No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG152270.14616750659947206No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC151370.1453035757139429No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA135660.13022318214542836No Hit
CAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCCAAGGCAA133190.12785217182625389No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG125620.12058555315574754No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC121950.11706263498920087No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA121540.11666906647468203No Hit
CAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTAGAGGTCTCAAGAA120870.11602591792656589No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC120260.11544036477081833No Hit
GGAGAGACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACA117390.11268538516918647No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT106030.10178065754739621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)