FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004829286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12793805
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT742140.5800776235060641No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG497870.38914927967090324No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG356260.2784628966910157No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT317050.24781525120947206No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC308250.24093692220570817No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC275690.2154871048917816No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC248890.19453946656213691No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA242280.18937290352635514No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC241050.18841150072241997No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC204390.15975700739537613No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC201650.15761534586465872No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT200070.15638037315716474No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT198150.1548796468290708No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG196500.15358996014086507No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT169000.13209518200410275No Hit
TCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA166800.1303755997531618No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC165720.12953144119360893No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC159470.12464626434434478No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG152410.119127968575416No Hit
GTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCACCGGCCCGT135470.10588718524317042No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA130370.10190088093417088No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA129140.10093947813023568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)