FastQCFastQC Report
Wed 11 May 2022
EGAF00004829290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12871346
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT746270.5797917327371979No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG500780.38906575893461337No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG356220.2767542726300731No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT318120.24715363878804905No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC312270.24260865957608474No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC272270.21153187863957665No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA253250.196754869304267No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC246030.1911455103452273No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC241160.18736191226620744No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC210240.16333956060228666No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC204650.15899658046640966No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG199850.1552673667540287No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT198610.1543039865449969No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT198290.15405537229750485No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT172640.13412738652196904No Hit
TCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA166320.12921725513400076No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC162680.1263892680687785No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC159540.12394974076526263No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG152510.11848799651567132No Hit
GTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCACCGGCCCGT136100.10573874713646887No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA130730.10156668929574264No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA129620.10070430862475456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)