FastQCFastQC Report
Sun 5 May 2024
EGAF00004829312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1106495546
Total Bases83.6 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24275140.2193875979686953No Hit
GTTGTCAAGATGCTACCGTTCAGAGCGGCTCGTGCTGCGTCGTCTCAAGT13608170.12298440828970134No Hit
GTTGTCAAGATGCTACCGTTCAGAGATTGGGAGGCTTTCGTACCGCTGCC12817740.1158408639450592No Hit
GTTGTCAAGATGCTACCGTTCAGAGCGCGTCCAATTTCCGAAGCCCCGCC12220750.11044554173017883No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)