FastQCFastQC Report
Sun 5 May 2024
EGAF00004829318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004829318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences933423516
Total Bases70.5 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29964890.3210213743961428No Hit
GTTGTCAAGATGCTACCGTTCAGAGCGGCTCGTGCTGCGTCGTCTCAAGT10263540.10995587559206083No Hit
GTTGTCAAGATGCTACCGTTCAGAGATTGGGAGGCTTTCGTACCGCTGCC9673820.10363805747529507No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)