FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14841637
Sequences flagged as poor quality0
Sequence length51-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGTGTA451900.09.514704120
AGTGTAG423950.08.697178120
AGATCTC316300.08.467599120
AGAGTGT496650.08.451842120
TAGATCT315700.08.274453120
AAGAGTG558850.08.241852120
ATCTCGG292500.08.150595120
GTAGATC428900.07.812729120
GTGTAGA426450.07.8012877120
GTAGGGA833900.07.662179120
TCGGTGG233500.07.638256120
GGGAAAG776750.07.6229014120
TCTCGGT258300.07.602352120
TAGGGAA793900.07.36746120
TGTAGAT490950.07.2289443120
TGTAGGG897300.07.207799120
GTGTAGG967600.07.0937357120
AGGGAAA847700.07.0557275120
AAAGAGT663400.07.042531120
CTCGGTG267050.06.9934654120
Produced by FastQC (version 0.11.5)