FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10969833
Sequences flagged as poor quality0
Sequence length73-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA300650.09.598525120
TGGTCGC367400.09.324328120
AAAAAAA614600.09.107721120
GGTCGCC345900.09.019313120
GTGGTCG401400.08.99787120
GCCGTAT297700.08.786751120
CGTATCA245300.08.731549120
GGTGGTC441200.08.702922120
GTCGCCG341300.08.648672120
TCGGTGG521800.08.301446120
TCGCCGT334200.08.239994120
GTATCAT284750.07.94325120
CCGTATC295250.07.701405120
CGGTGGT499400.07.6406302120
ATCTCGG629750.07.621535120
CTCGGTG553200.07.5157394120
TCTCGGT587400.07.4764905120
TCATTAA219950.07.3647914120
GATCTCG671550.07.1203384120
GCGTCGG45950.07.0506454120
Produced by FastQC (version 0.11.5)