FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15902918
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTTCAG107150.016.0136571
GGTCCCG21750.015.4470451
GGTCTAC38250.015.3713251
GGTTACG57650.015.2980011
GGTCCCT14050.014.9454291
GGTCCCC14950.014.8483171
GGTTCCG105750.014.6371321
GGTTGCG71350.014.3786731
GGTTCCA85200.014.2946361
AAAAAAA1854700.014.145501120
GGTCCCA22650.014.0386171
GGTTCAC47650.013.8498941
GGTTACC41600.013.8450511
GGTTTAC71800.013.7872031
GGTTAGG14800.013.7826861
GGTCCTG38500.013.7131941
GGTTCGG75750.013.7018791
GGTCCTA16000.013.4989251
GGTCTTA60900.013.3979471
GGTCCAC27800.013.1644181
Produced by FastQC (version 0.11.5)