FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10677863
Sequences flagged as poor quality0
Sequence length59-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA632100.011.095596120
GGTCGCC437800.09.702408120
CGTATCA291650.09.401047120
CGCCGTA364100.09.145222120
GCCGTAT354550.08.985433120
TCGCCGT409000.08.933383120
GTATCAT300950.08.931114120
GTCGCCG424550.08.917076120
CCGTATC344600.08.809621120
TGGTCGC460400.08.698615118-119
TCATTAA231850.08.539429120
GTGGTCG497700.08.426195120
TCGGTGG635450.08.006385120
CTCGGTG665850.07.9832425120
GGTGGTC542050.07.7699766120
CGGTGGT608150.07.7048163120
ATCATTA270250.07.525857120
TCTCGGT703250.07.383997118-119
ATCTCGG750250.07.26109120
CATTAAA234000.07.1790032120
Produced by FastQC (version 0.11.5)