FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12922833
Sequences flagged as poor quality0
Sequence length50-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC183550.088.172905120
GAGCACA290900.057.519722120
AGAGCAC394650.041.61494118-119
AAGAGCA583900.028.422123118-119
GAAGAGC660750.024.743246116-117
GGAAGAG802750.020.649368116-117
CGGAAGA947950.017.341734114-115
TCGGAAG956950.017.244125114-115
ACACGTC56700.016.440807120
CACACGT49500.015.983897118-119
CACGTCT53700.015.754648120
ATCGGAA1129850.014.695242112-113
GATCGGA1155600.014.415243112-113
AGATCGG1267650.013.106954110-111
TAGATCG282600.012.224382110-111
CTAGATC49850.011.785731110-111
GAGATCG524550.010.991359110-111
CTAGGAC4000.001508190410.8436971
GCACACG77500.010.309977120
TTAGATC86550.09.956278116-117
Produced by FastQC (version 0.11.5)