FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13747145
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC142300.073.38991120
GAGCACA229350.047.580883120
AGAGCAC314900.037.08925120
AAGAGCA488700.023.953026120
GAAGAGC567100.021.002901120
GGAAGAG707950.016.982994120
TCGGAAG840150.014.42868120
CGGAAGA851900.014.166416118-119
GATCGGA996450.012.60324120
ATCGGAA977800.012.362814116-117
AGATCGG1090850.011.262827118-119
TAGATCG279350.010.531967116-117
CTAGATC72250.010.089179114-115
TTAGATC114850.09.150615120
AAGATCG473600.08.879422118-119
GAGATCG365050.08.502047118-119
CAGATCG316550.07.9919486112-113
ACACGTC55550.07.97214120
CACGTCT50500.07.853152120
CACACGT49500.07.5960155118-119
Produced by FastQC (version 0.11.5)