FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12984515
Sequences flagged as poor quality0
Sequence length54-126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCT380950.09.748149120
TCTCGGT308650.09.174348120
AGATCTC366550.09.132728120
GATCTCG369350.08.803608120
TGGTCGC193750.08.793791120
ATCTCGG336850.08.691261120
GTAGATC505550.08.484797120
GGTGGTC237450.08.463931120
CTCGGTG298700.08.455638120
AGTGTAG525600.08.423654120
GAGTGTA563300.08.317844120
TCGGTGG284850.08.19281120
GTGGTCG214050.08.184029120
GTGTAGA512400.08.172329120
AGAGTGT611100.08.010828120
AAGAGTG676150.07.8789697120
GGTCGCC203900.07.5322065120
CGGTGGT280950.07.345628120
TGTAGAT541950.07.328216118-119
TAGGGAA940800.06.944326120
Produced by FastQC (version 0.11.5)