FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13140120
Sequences flagged as poor quality0
Sequence length52-126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAAAAA1663550.014.083332120
GCGTCGG80950.010.598378120
CGTATCA742400.09.883454120
TCATTAA591500.09.595258120
ATCATTA665550.09.149673120
CCGTATC818850.09.121898120
GTATCAT740800.09.094923120
CATTAAA563600.08.878003120
CGCCGTA954500.08.837504120
GCCGTAT882700.08.788315120
TATCATT764500.08.750193120
TCGCCGT1066300.08.355401120
CCCCCCG6700.00495553168.05934051
GGTCGCC1168600.08.04495120
TGGTCGC1233450.07.981918120
GTCGCCG1130850.07.82276118-119
ATTAAAA660800.07.6719704120
GTGGTCG1322450.07.653429120
CCCCCTC17651.7958882E-87.138491
GGTGGTC1411650.07.0869446118-119
Produced by FastQC (version 0.11.5)