FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12456439
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC165200.0101.92277120
GAGCACA287050.061.80487120
AGAGCAC389000.044.908108120
AAGAGCA578200.030.63509118-119
GAAGAGC661100.026.286623116-117
GGAAGAG808350.021.982882116-117
CGGAAGA944800.018.432304114-115
TCGGAAG981000.018.131138114-115
ATCGGAA1134850.015.463135112-113
GATCGGA1166400.015.25397112-113
AGATCGG1268950.013.748695110-111
TAGATCG344450.012.978855110-111
CTAGATC62800.012.92314114-115
GAGATCG496450.011.228146110-111
CAGATCG499950.010.97358110-111
TTAGATC95700.010.738715108-109
ATAGATC184100.010.337691112-113
CACACGT42300.09.923033118-119
GTAGATC114650.09.659978112-113
AAGATCG264250.09.4577055110-111
Produced by FastQC (version 0.11.5)