FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004830257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004830257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15799731
Sequences flagged as poor quality0
Sequence length50-126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCACAC226300.089.42843120
GAGCACA369350.054.503803120
AGAGCAC498350.040.507053118-119
AAGAGCA751400.027.128576118-119
GAAGAGC836900.024.188784116-117
GGAAGAG1028050.019.805908116-117
CGGAAGA1198800.016.95629114-115
TCGGAAG1239200.016.417309120
CACGTCT63900.014.428348120
ATCGGAA1460900.013.997295112-113
CACACGT60400.013.876752120
GATCGGA1486200.013.751341112-113
ACACGTC65250.013.545953120
AGATCGG1609450.012.724097110-111
TAGATCG406500.011.6264925110-111
CTAGATC76300.011.610947108-109
ACGTCTG85150.011.096068120
GAGATCG628800.010.443097116-117
TTAGATC129350.010.190882120
CAGATCG571550.09.792459110-111
Produced by FastQC (version 0.11.5)